蔣榮先

Accepted Papers to be Published

專書

1.蔣榮先 "從A I到智慧醫療" 城邦集團商周出版社 2020年

2.蔣榮先 "當數位轉型碰上生成式AI" 城邦集團商周出版社 2024年

Refered Papers

Ÿ Yi Liang Tsai, Chia Lin Wu, Jung Hsien Chiang/ Apr 2026/Explainable machine learning integrating bioelectrical impedance for 6-month cardiovascular risk in peritoneal dialysis/Renal Failure/https://doi.org/10.1080/0886022X.2026.2660005

Ÿ Shih-Yen Lin, Pei-Chen Tsai, Fang-Yi Su, Chun-Yen Chen, Fuchen Li, Junhan Zhao, Yuk Yeung Ho, Tsung-Lu Michael Lee, Elizabeth Healey, Po-Jen Lin, Ting-Wan Kao, Dmytro Vremenko, Thomas Roetzer-Pejrimovsky, Lynette Sholl, Deborah Dillon, Nancy U Lin, David Meredith, Keith L Ligon, Ying-Chun Lo, Nipon Chaisuriya, David J Cook, Adelheid Woehrer, Jeffrey Meyerhardt, Shuji Ogino, MacLean P Nasrallah, Jeffrey A Golden, Sabina Signoretti, Jung-Hsien Chiang, Kun-Hsing Yu/Dec 2025/Contrastive learning enhances fairness in pathology artificial intelligence systems/Cell Reports Medicine/10.1016/j.xcrm.2025.102527

Ÿ Junhan Zhao, Shih-Yen Lin, Raphaël Attias, Liza Mathews, Christian Engel, Guillaume Larghero, Dmytro Vremenko, Ting-Wan Kao, Tsung-Hua Lee, Yu-Hsuan Wang, Cheng Che Tsai, Eliana Marostica, Ying-Chun Lo, David Meredith, Keith L Ligon, Omar Arnaout, Thomas Roetzer-Pejrimovsky, Shih-Chieh Lin, Natalie NC Shih, Nipon Chaisuriya, David J Cook, Jung-Hsien Chiang, Chia-Jen Liu, Adelheid Woehrer, Jeffrey A Golden, MacLean P Nasrallah, Kun-Hsing Yu/Sep 2025/Uncertainty-aware ensemble of foundation models differentiates glioblastoma from its mimics/Nature Communications/8341 (2025). https://doi.org/10.1038/s41467-025-64249-6

Ÿ  Ben Phan, Jung-Hsien Chiang/JUL 2025/MyMy at SemEval-2025 Task 9: A Robust Knowledge-Augmented Data Approach for Reliable Food Hazard Detection/Proceedings of the 19th International Workshop on Semantic Evaluation (SemEval-2025)/812–822 https://aclanthology.org/2025.semeval-1.112/

Ÿ  Fang-Yi Su , Gia-Han Ngo , Ben Phan , Jung-Hsien Chiang/JUL 2025/CAS: enhancing implicit constrained data augmentation with semantic enrichment for biomedical relation extraction and beyond/Database/Volume 2025, 2025, baaf025, https://doi.org/10.1093/database/baaf025

Ÿ  Po-Jen Lin, Shih-Yen Lin, Pei-Chen Tsai, Fang-Yi Su, Chun-Yen Chen, Fuchen Li, Junhan Zhao, Yuk Yeung Ho, Tsung-Lu Michael Lee, Elizabeth Healey, Ting-Wan Kao, Irene Tai-Lin Lee, Eric Chongze Ma, Jung-Hsien Chiang, Kun-Hsing Yu/Jun 2025/Mutation rate differences across populations and association with performance disparities in pathology AI diagnostic models./Journal of Clinical Oncology/Journal of Clinical Oncology Volume 43, Number 16_suppl https://doi.org/10.1200/JCO.2025.43.16_suppl.1603

Ÿ Shih-Yen Lin, Pei-Chen Tsai, Yixuan Dong, Po-Chih Lin, Fang-Yi Su, Yuk Yeung Ho, Ting-Wan Kao, Tsung-Lu Michael Lee, Po-Jen Lin, Jung-Hsien Chiang, Kun-Hsing Yu/Jun 2025/Generative AI to augment the fairness of foundation models in cancer pathology diagnosis/ournal of Clinical Oncology/Journal of Clinical Oncology Volume 43, Number 16_suppl https://doi.org/10.1200/JCO.2025.43.16_suppl.e23230

Ÿ Tzu-Ying Chen, Miyuki Hsing-Chun Hsieh, Fang-Yi Su, Chung-Yi Li, Ming-Cheng Wang, Chin-Chung Tseng, Kuan-Hung Liu, Jung-Hsien Chiang, Edward Chia-Cheng Lai/Jun 2025/Risk of intradialytic hypotension among different antihypertensives in haemodialysis patients/Clinical Kidney Journal/Clinical Kidney Journal, Volume 18, Issue 6, June 2025, sfaf159, https://doi.org/10.1093/ckj/sfaf159

Ÿ Yixuan Dong, Fang-Yi Su, Jung-Hsien Chiang/Mar 2025/SGD-Mix: Enhancing Domain-Specific Image Classification with Label-Preserving Data Augmentation/arXiv preprint arXiv/arXiv:2505.11813 [cs.CV] (or arXiv:2505.11813v1 [cs.CV] for this version) https://doi.org/10.48550/arXiv.2505.11813Focus to learn more

Ÿ Ching-Ju Chiu, Lin-Chun Hua, Jung-Hsien Chiang, Chieh-Ying Chou/Mar 2025/User-Centered Prototype Design of a Health Care Robot for Treating Type 2 Diabetes in the Community Pharmacy: Development and Usability Study/JMIR Human Factors/ 2025;12:e48226 doi:10.2196/48226

Ÿ Lin-Chun Huang, Ching Chieh Tsao, Fang-Yi Su, Jung-Hsien Chiang/Mar 2025/Debiasing Diffusion Model: Enhancing Fairness through Latent Representation Learning in Stable Diffusion Model/arXiv preprint arXiv/arXiv:2503.12536

Ÿ Cong-Phuoc Phan, Ben Phan, Jung-Hsien Chiang/ Oct 2024 / Optimized biomedical entity relation extraction method with data augmentation and classification using GPT-4 and Gemini / Database / 2024, baae104

Ÿ Rezarta Islamaj, Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Tiago Almeida, Richard AA Jonker, Sofia IR Conceição, Diana F Sousa, Cong-Phuoc Phan, Jung-Hsien Chiang, Jiru Li, Dinghao Pan, Wilailack Meesawad, Richard Tzong-Han Tsai, M Janina Sarol, Gibong Hong, Airat Valiev, Elena Tutubalina, Shao-Man Lee, Yi-Yu Hsu, Mingjie Li, Karin Verspoor, Zhiyong Lu/ August 2024/ The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII/ Database/ 2024, baae069

Ÿ Hui-O Chen, Yuan-Chi Cui, Peng-Chan Lin, Jung-Hsien Chiang / June 2024 / An Innovative Multi-Omics Model Integrating Latent Alignment and Attention Mechanism for Drug Response Prediction/ Journal of Personalized Medicine/ 14(7), 694

Ÿ Mu-Hung Tsai, Joseph TC Chang, Hsi-Huei Lu, Yuan-Hua Wu, Tzu-Hui Pao, Yung-Jen Cheng, Wen-Yen Zheng, Chen-Yu Chou, Jing-Han Lin, Tsung Yu, Jung-Hsien Chiang / December 2023 / Development and validation of a machine learning model of radiation-induced hypothyroidism with clinical and dose–volume features / Radiotherapy and Oncology / 189,109911

Ÿ Hsin-Hsiung Chang, Jung-Hsien Chiang, Chun-Chieh Tsai, Ping-Fang Chiu / June 2023 / Predicting Hyperkalemia inPatients with Advanced Chronic Kidney Disease Using The XGBoost Model / BMC nephrology / 24(1),169

Ÿ Pei-Chen Tsai, Tsung-Hua Lee, Kun-Chi Kuo, Fang-Yi Su, Tsung-Lu Michael Lee, Eliana Marostica, Tomotaka Ugai, Melissa Zhao, Mai Chan Lau, Juha P Väyrynen, Marios Giannakis, Yasutoshi Takashima, Seyed Mousavi Kahaki, Kana Wu, Mingyang Song, Jeffrey A Meyerhardt, Andrew T Chan, Jung-Hsien Chiang, Jonathan Nowak, Shuji Ogino, Kun-Hsing Yu/ April 2023 / Histopathology Images Predict Multi-Omics Aberrations and Prognoses in Colorectal Cancer Catients / Nature Communications / 14(1),2102

Ÿ Hsin-Hsiung Chang, Jung-Hsien Chiang, Chi-Shiang Wang, Ping-Fang Chiu, Khaled Abdel-Kader, Huiwen Chen, Edward D Siew, Jonathan Yabes, Raghavan Murugan, Gilles Clermont, Paul M Palevsky, Manisha Jhamb / September 2022 / Predicting Mortality Using Machine Learning Algorithms in Patients Who Require Renal Replacement Therapy in the Critical Care Unit / Journal of Clinical Medicine / 11(18), 5289

Ÿ Chi-Shiang Wang, Fang-Yi Su, Jung-Hsien Chiang / July 2022 / MedCheX: An Efficient COVID-19 Detection Model for Clinical Usage / Journal of Information Science & Engineering / 38(4), 749-759

Ÿ Pei-Yi Hao, Jung-Hsien Chiang, Yu-De Chen / May 2022 / Possibilistic Classification by Support Vector Networks / Neural Networks / 149,40-56

Ÿ Ching-Ju Chiu,Lin-Chun Hua,Chieh-Ying Chou,Jung-Hsien Chiang / April 2022 / Robot-Enhanced Diabetes Care for Middle-Aged and Older Adults Living with Diabetes in the Community: A Small Sample Size Mixed-Method Evaluation /  Plos One / 17(4),e0265384

Ÿ Jung-Hsien Chiang, Chung-Yao Ma, Chi-Shiang Wang, Pei-Yi Hao / January 2022 / An Adaptive, Context-Aware, and Stacked Attention Network-Based Recommendation System to Capture Users Temporal Preference / IEEE Transactions on Knowledge and Data Engineering / 1-1

Ÿ Sina Abdollahi,Seyedeh Zahra Dehghanian,Liang-Yi Hung,Shiang-Jie Yang,Dao-Peng Chen,L Jeffrey Medeiros, Jung-Hsien Chiang, Kung-Chao Chang / October 2021 / Deciphering Genes Associated with Diffuse Large B-Cell Lymphoma with Lymphomatous Effusions: A Mutational Accumulation Scoring Approach / Biomark Research / 9(1),74

Ÿ Hui-O Chen,Peng-Chan Lin,Chen-Ruei Liu,Chi-Shiang Wang,Jung-Hsien Chiang  / October 2021 / Contextualizing Genes by Using Text-Mined Co-Occurrence Features for Cancer Gene Panel Discovery / Frontiers in Genetic /  12,771435

Ÿ Sina Abdollahi,Peng-Chan Lin,Jung-Hsien Chiang / October 2021 / WinBinVec: Cancer-Associated Protein-Protein Interaction Extraction and Identification of 20 Various Cancer Types and Metastasis Using Different Deep Learning Models /  IEEE Journal of Biomedical and Health Informatics / 25(10),4052-4063

Ÿ Sina Abdollahi, Peng-Chan Lin, Meng-Ru Shen, Jung-Hsien Chiang / July 2021 / Precise Uncertain Significance Prediction Using Latent Space Matrix Factorization Models: Genomics Variant and Heterogeneous Clinical Data-Driven Approaches / Briefings in Bioinformatics / 22(4), bbaa281

Ÿ Cheng-Yi Kao,Chiao-Yun Lin,Cheng-Chen Chao,Han-Sheng Huang,Hsing-Yu Lee,Chia-Ming Chang,Kang Sung,Ting Rong Chen,Po-Chang Chiang,Li-Ting Huang,Bow Wang,Yi-Sheng Liu,Jung-Hsien Chiang,Chien-Kuo Wang,Yi-Shan Tsai / June 2021 / Automated Radiology Alert System for Pneumothorax Detection on Chest Radiographs Improves Efficiency and Diagnostic Performance / Diagnostics / 2021,11(7),1182

Ÿ Chi-Shiang Wang,Bo-Syun Chen,Jung-Hsien Chiang / June 2021/ TDD-BPR: The Topic Diversity Discovering on Bayesian Personalized Ranking for Personalized Recommender System /  Neurocomputing / 441, 202-213

Ÿ Sina Abdollahi, Peng-Chan Lin, Jung-Hsien Chiang / May 2021 / DiaDeL: An Accurate Deep Learning-Based Model with Mutational Signatures for Predicting Metastasis Stage and Cancer Types / IEEE/ACM Transactions on Computational Biology and Bioinformatics / 19(3),1336-1343

Ÿ Peng-Chan Lin,Hui-O Chen,Chih-Jung Lee,Yu-Min Yeh,Meng-Ru Shen,Jung-Hsien Chiang / January 2021 / Comprehensive Assessments of Germline Deletion Structural Variants Reveal the Association between Prognostic MUC4 and CEP72 Deletions and Immune Response Gene Expression in Colorectal Cancer Patients / Human Genomics / 15(1),3

Ÿ Ping-Yen Liu,Yi-Shan Tsai,Po-Lin Chen,Huey-Pin Tsai,Ling-Wei Hsu,Chi-Shiang Wang,Nan-Yao Lee,Mu-Shiang Huang,Yun-Chiao Wu,Wen-Chien Ko,Yi-Ching Yang,Jung-Hsien Chiang,Meng-Ru Shen / October 2020 / Application of an Artificial Intelligence Trilogy to Accelerate Processing of Suspected Patients With SARS-CoV-2 at a Smart Quarantine Station: Observational Study / Journal of Medical Internet Research /  22(10):e19878

Ÿ Mu-Shiang Huang, Chi-Shiang Wang, Jung-Hsien Chiang, Ping-Yen Liu, Wei-Chuan Tsai / September 2020 / Automated Recognition of Regional Wall Motion Abnormalities Through Deep Neural Network Interpretation of Transthoracic Echocardiography / Circulation / 142(16),1510-1520

Ÿ Kun-Hsing Yu, Tsung-Lu Michael Lee, Ming-Hsuan Yen, S. C. Kou, Bruce Rosen, Jung-Hsien Chiang, Isaac S. Kohane / August 2020 / Reproducible Machine Learning Methods for Lung Cancer Detection Using Computed Tomography Images / Journal of Medical Internet Research / 22(8),e16709

Ÿ D.A. Devyatkin1, A.I. Molodchenkov1, A.V. Lukin1, Y.S. Kim, A.A. Boyko, P.A. Karalkin, J.-H. Chiang,G.D. Volkova, A.Yu. Lupatov / September 2019 / Towards Automated Meta-Analysis of Biomedical Texts in the Field of Cell-based Immunotherapy / Experimental Research / 2,3

Ÿ Chia-Jung Yang, Jung-Hsien Chiang / December 2018 / Cateye: A Hint-Enabled Search Engine Framework for Biomedical Classification Systems / International Computer Symposium / 1013,758-763

Ÿ  RE Suvorov, Ya S Kim, AM Gisina, JH Chiang, KN Yarygin, A Yu Lupatov / November 2018 / Surface Molecular Markers of Cancer Stem Cells: Computation Analysis of Full-Text Scientific Articles / Bulletin of Experimental Biology and Medicine / 166(1),135-140

Ÿ Chia-Jung Yang, Jung-Hsien Chiang / October 2018 / Gene Ontology Concept Recognition Using Named Concept: Understanding the Various Presentations of the Gene Functions in Biomedical Literature / Database: The Journal of Biological Databases and Curation / bay115

Ÿ Kun-Hsing Yu, Tsung-Lu Michael Lee, Yu-Ju Chen, Christopher Ré, Samuel C Kou, Jung-Hsien Chiang, Michael Snyder, Isaac S Kohane / August 2018 / A Cloud-Based Metabolite and Chemical Prioritization System for the Biology/Disease-Driven Human Proteome Project / Journal of Proteome Research / 17(12),4345-4357

Ÿ Jui-Hung Chang, Chen-En Tsai, Jung-Hsien Chiang / July 2018 / Using Heterogeneous Social Media as Auxiliary Information to Improve Hotel Recommendation Performance / IEEE Access / 6,42647-42660

Ÿ Yu Kun-Hsing, Lee Tsung-Lu Michael, Wang Chi-Shiang, Chen Yu-Ju, Re Christopher, Kou Samuel C., Chiang Jung-Hsien*, Kohane Isaac S., Snyder Michael / April 2018 / Systematic Protein Prioritization for Targeted Proteomics Studies through Literature Mining / Journal of Proteome Research / 17(4),1383-1396 

Ÿ Hsih-Te Yang, Jiun-Huang Ju, Yue-Ting Wong, Ilya Shmulevich, Jung-Hsien Chiang / May 2017 / Literature-Based Discovery of New Candidates for Drug Repurposing / Briefings in Bioinformatics / 18(3),488-497

Ÿ Kim  YS,  Kaidina  AM, Chiang JH,  Yarygin KN, Lupatov  AY / January 2017 / Cancer Stem Cell Molecular Markers Verified in vivo / Biochemistry Moscow-Supplement Series B-Biomedical Chemistry / 11(1),43-54

Ÿ Hung Shan,  Li Min-Shan, Chen  Yen-Lin, Chiang Jung-Hsien, Chen Ying-Yeh, Hung Galen Chin-Lun / October 2016 / Smartphone-Based Ecological Momentary Assessment for Chinese Patients with Depression: An Exploratory Study in Taiwan / Asian Journal of Psychiatry / 23,131–136

Ÿ Yang HT, Yang H, Chiang JH, Wang SJ / October 2016 / Translating Genomic Sequences into Antibody Efficacy and Safety Against Influenza toward Clinical Trial Outcomes: A Case Study / Drug Discovery Today / 21(10),1664-1671

Ÿ Galen Chin-Lun Hung, Pei-Ching Yang, Chia-Chi Chang, Jung-Hsien Chiang, Ying-Yeh Chen / July 2016 / Predicting Negative Emotions Based on Mobile Phone Usage Patterns: An Exploratory Study / JMIR Research Protocols / 5(3),e160

Ÿ YS Kim, AM Kaidina, JH Chiang, KN Yarygin, A Yu Lupatov / March 2016 / Molecular Markers of Cancer Stem Cells Verified in Vivo / Biomeditsinskaya Khimiya / 62(3),228-38

Ÿ Hung G.Chin-Lun, Li MS, Chen YL, Chiang JH / March 2016 / Capturing Depression with Your Smartphone: Validity and Utilization of iHOPE for Depressed Patients in Taiwan / European Psychiatry / 33,S283

Ÿ Wen-Chieh Fang, Huan-Jui Chang, Chen Yang, Hsih-Te Yang, Jung-Hsien Chiang / December 2015 / A Boosting Approach for Predicting Slope of ALS / F1000Research / https://doi.org/10.7490/f1000research.1111120.1

Ÿ WS Cheng, JH Chiang / January 2015 / Analysis of Prognostic Marker Panel for High-Grade Serous Ovarian Cancer through Age-Dependent DNA Methylation. J Phylogen Evolution Biol. 3: 153 / These Results also Indicated that Our Method Reliably Extracted Age-Dependent Markers with the Potential to Consider Further Clinical Testing / DOI:10.4172/2329-9002.1000153

Ÿ Jung-Hsien Chiang, Jiun-Huang Ju / December 2014 / Discovering Novel Protein-protein Interactions by Measuring the Protein Semantic Similarity from the Biomedical Literature / Journal of Bioinformatics and Computational Biology / 12(6),SI 

Ÿ Jung-Hsien Chiang, Pei-Ching Yang, Hsuan Tu / August 2014 / Pattern Analysis in Daily Physical Activity Data for Personal Health Management / Pervasive and mobile computing / 13,13-25

Ÿ  Yuqing Mao, Kimberly Van Auken, Donghui Li, Cecilia N Arighi, Peter McQuilton, G Thomas Hayman, Susan Tweedie, Mary L Schaeffer, Stanley JF Laulederkind, Shur-Jen Wang, Julien Gobeill, Patrick Ruch, Anh Tuan Luu, Jung-jae Kim, Jung-Hsien Chiang, Yu-De Chen, Chia-Jung Yang, Hongfang Liu, Dongqing Zhu, Yanpeng Li, Hong Yu, Ehsan Emadzadeh, Graciela Gonzalez, Jian-Ming Chen, Hong-Jie Dai, Zhiyong L / August 2014 / Overview of the Gene Ontology Task at BioCreative IV / Database-The Journal of Biological Databases and Curation / 25(2014),bau086

Ÿ Jennifer M Holden, Ludek Koreny, Samson Obado, Alexander V Ratushny, Wei-Ming Chen, Jung-Hsien Chiang, Steven Kelly, Brian T Chait, John D Aitchison, Michael P Rout, Mark C Field / May 2014 / Nuclear Pore Complex Evolution: a Trypanosome Mlp Analogue Functions in Chromosomal Segregation but Lacks Transcriptional Barrier Activity / Molecular biology of the cell / 25(9),1421-1436

Ÿ Jung-Hsien Chiang, Wan-Shu Cheng, Leroy Hood, and Qiang Tian / May 2014 / An Epigenetic Biomarker Panel for Glioblastoma Multiforme Personalized Medicine through DNA Methylation Analysis of Human Embryonic Stem Cell-like Signature / OMICS: A Journal of Integrative Biology / 18(5),310-323

Ÿ Pei-Ching Yang, Chia-Chi Chang, Yen-Lin Chen, Jung-Hsien Chiang, Galen Chin-Lun Hung / April 2014 / Portable Assessment of Emotional Status and Support System / International Conference on Health Information Science / 8423,175-183

Ÿ Jung-Hsien Chiang , Lin Chan-Hsien / March 2014 / NCS: Incorporating Positioning Data to Quantify Nucleosome Stability in Yeast / Bioinformatics / 30(6),761-767

Ÿ Samuel A. Danziger,  Alexander V. Ratushny, Jennifer J. Smith, Ramsey A. Saleem, Yakun Wan, Christina E. Arens, Abraham M. Armstrong, Katherine Sitko, Wei-Ming Chen, Jung-Hsien Chiang,  David J. Reiss, Nitin S. Baliga,  John D. Aitchison / Februery 2014 / Molecular Mechanisms of System Responses to Novel Stimuli are Predictable from Public Data / Nucleic Acids Research / 42(3),1442-1460

Ÿ Cheng, Wan-Shu, Chiang, Jung-Hsien / December 2013 / CGPredictor: A Systematic Integrated Analytic Tool for Mining and Examining Genome-scale Cancer Independent Prognostic Epigenetic Marker Panels / BMC Systems Biology / 7(6),S10

Ÿ Wei-Ming Chen, Samuel A Danziger, Jung-Hsien Chiang, John D Aitchison / October 2013 / PhosphoChain: A Novel Algorithm to Predict Kinase and Phosphatase Networks from High-throughput Expression Data / Bioinformatics / 29(19),2435-44

Ÿ Tsunglin Liu, Cheng-Hung Tsai, Wen-Bin Lee, Jung-Hsien Chiang / July 2013 / Optimizing Information in Next-Generation-Sequencing (NGS) Reads for Improving De Novo Genome Assembly / PLoS ONE / 8(7),e69503

Ÿ Chiang JH, Chang DTH, Kao HY / April 2013 / Introduction to the 23rd International Conference on Genome Informatics (GIW2012) / Gene / 518(1),1-1特刊: SI

Ÿ Van de Vosse DW, Wan Y, Lapetina DL, Chen WM, Chiang JH, Aitchison JD, Wozniak RW / February 2013 / A Role for the Nucleoporin Nup170p in Chromatin Structure and Gene Silencing / Cell / 152(5),969-983

Ÿ Lee TLM, Chiang JH / November 2012 / A Systems Biology Approach to Solving the Puzzle of Unknown Genomic Gene-Function Association Using Grid-Ready SVM Committee Machines / IEEE Computational Intelligence Magazine / 7(4),46-54

Ÿ Chang, DTH, Ke, CH, Lin JH, Chiang JH / 2012 / AutoBind: Automatic Extraction of Protein-Ligand Binding Affinity Data from Biological Literature / Bioinformatics / 28(16),2162-2168

Ÿ Wan Yakuna, Chen Weimingb, Xing  Jiec, Tan Jinyina, Li Binga, Chen Huiyinga, Lin Zhanxianb, Chiang Jung-Hsienb, Saleem Ramsey A.d / October 2011 / Erratum: Transcriptome Profiling Reveals a Novel Role for Trichostatin A in Antagonizing Histone Chaperone Chz1 Mediated Telomere Anti-Silencing / FEBS Letters / 585(19),31463

Ÿ Lin JW,  Chang CH,  Lin MW,  Ebell, MH,  Chiang JH / August 2011 / Automating the Process of Critical Appraisal and Assessing the Strength of Evidence with Information Extraction Technology / Journal of Evaluation in Clinical Practice / 17(4),832-838

Ÿ Yakun Wan ,Weiming Chen, Jie Xing, Jinyin Tan, Bing Li, Huiying Chen, Zhanxian Lin, Jung- Hsien Chiang, Saleem Ramsey / August 2011 / Transcriptome Profiling Reveals a Novel Role for Trichostatin A in Antagonizing Histone Chaperone Chz1 Mediated Telomere Anti-Silencing / FEBS Letters / 585(15),2519-2525

Ÿ Chiang JH,Liu HH, Huang YT / April 2011 / Condensing Biomedical Journal Texts through Paragraph Ranking / Bioinformatics / 27(8),1143-1149

Ÿ Chao SY, Chiang JH, Huang AM, Chang WS / March 2011 / An Integrative Approach to Identifying Cancer Chemoresistance-Associated Pathways / BMC Medical GenomicEDICAL GENOMICS / 4,23

Ÿ Yeh CY, Shin SM, Yeh HH, Wu TJ, Shin JW, Chang TY, Raghavaraju G, Lee CT, Chiang JH, Tseng VS, Lee YCG, Shen CH, Chow NH, Liu HS / April 2011 / Transcriptional Activation of the Axl and PDGFR-Alpha by C-Met through a Ras- and Src-Independent Mechanism in Human Bladder Cancer / BMC Cancer / 11,139

Ÿ Yang Pei-Chinga,Chiang Jung-Hsiena,Liu  Jen-Chub,Wen Yi-Lunc,Chuang Kuo-Yuc / December 2010 / An efficient Cloud for Wellness Self-Management Devices and Services / Proceedings - 4th International Conference on Genetic and Evolutionary Computing, ICGEC 2010 / 767-770

Ÿ Michael T-L Lee, Jimmy J-M Su, Chi-Rong Li, Patrick Y-W Chu, Ming-Sheng Liu, Jung-Hsien Chiang, Kelvin K-C Tsai, Kok-Tong Tan / October 2010 / Gene Expression Signatures Associated with Protracted Stromal Responses to Therapeutically Relevant Cytotoxic Stimuli Predict Breast Cancer Chemoresponsiveness / Clinical Cancer Research / 16 (19_Supplement),B22

Ÿ Chiang JH, Lin JW, Yang CW / May 2010 / Automated Evaluation of Electronic Discharge Notes to Assess Quality of Care for Cardiovascular Diseases Using Medical Language Extraction and Encoding System (MedLEE) / Journal of the American Medical Informatics Association / 17(3),245-252

Ÿ Wan YK, Chiang JH, Lin CH, Arens CE, Saleem RA, Smith JJ , Aitchison JD / March 2010 / Histone Chaperone Chz1p Regulates H2B Ubiquitination and Subtelomeric Anti-silencing / Nucleic Acids Research / 38(5),1431-1440

Ÿ Cheng LH, Lu W, Kulkarni B, Pejovic T, Yan, XW, Chiang JH,  Hood L, Odunsi K, Lin BY / March 2010 / Analysis of Chemotherapy Response Programs in Ovarian Cancers by the Next-Generation Sequencing Technologies / Gynecologic Oncology / 117(2)159-169

Ÿ Shih-Yi Chao; Jung-Hsien Chiang / October 2009 / Reconstruct Feedback Control of Cell Cycle-Regulated Networks of the Yeast by Neural Network Computing / 2006 International Conference on Computing & Informatics / 5276483

Ÿ Yung-Chun Chang, Pei-Ching Yang, Jung-Hsien Chiang / September 2009 / Ontology-Based Intelligent Web Mining Agent for Taiwan Travel / 2009 IEEE/WIC/ACM International Joint Conference on Web Intelligence and Intelligent Agent Technology / 3,421-424

Ÿ Jung-Hsien Chiang / September 2009 / Tech-Ware: Bioinformatics and Computational Biology Resources [Best of the Web] / IEEE Signal Processing Magazine / 26(5),153-158

Ÿ Hao PY, Chiang JH, Lin YH / 2009 / A New Maximal-margin Spherical-Structured Multi-class Support Vector Machine / Applied Intelligence / 30(2) 98-111

Ÿ Wan YK, Saleem RA, Ratushny AV, Roda O, Smith JJ 1, Lin CH, Chiang JH, Aitchison JD / 2009 / Role of the Histone Variant H2A.Z/Htz1p in TBP Recruitment, Chromatin Dynamics, and Regulated Expression of Oleate-Responsive Genes / Molecular and Cellular Biology / 29(9),2346-2358

Ÿ Majetl R, Becker MW, Tian Q, Lee TLM, Yan XW, Liu R, Chiang JH, Hood L, Clarke MF, Weissman IL / March 2009 / Dysregulated Gene Expression Networks in Human Acute Myelogenous Leukemia Stem Cells / Proceedings of the National Academy of Sciences of the United States of America / 106(9),3396-3401

Ÿ Chiang JH, Ho SH, Wang WH / October 2008 / Similar Genes Discovery System (SGDS): Application for Predicting Possible Pathways by Using GO Semantic Similarity Measure / Expert Systems with Applications / 35(3),1115-1121

Ÿ Chiang JH, Lee TLM / August 2008 / In Silico Prediction of Human Protein Interactions Using Fuzzy-SVM Mixture Models and Its Application to Cancer Research / IEEE Transactions on Fuzzy Systems / 16(4),1087-1095

Ÿ Hao PY, Chiang JH / April 2008 / Fuzzy Regression Analysis by Support Vector Learning Approach / IEEE Transactions on Fuzzy Systems / 16(2),428-441

Ÿ Chiang JH, Ho SH / March 2008 / A Combination of Rough-Based Feature Selection and RBF Neural Network for Classification Using Gene Expression Data / IEEE Transactions on Nanobioscience / 7(1),91-99

Ÿ Yin ZX, Chiang JH / January 2008 / Novel Algorithm for Coexpression Detection in Time-Varying Microarray Data Sets / IEEE-ACM Transactions on Computational Biology and Bioinformatics / 5(1),120-135

Ÿ Chiang JH, Yin ZX / November 2007 / Unsupervised Minor Prototype Detection Using an Adaptive Population Partitioning Algorithm / Pattern Recognition Attern Recognition / 40(11),3132-3145

Ÿ Chiang JH, Liu HS, Chao SY, Chen CY / November 2007 / Discovering Gene-Gene Relations from Sequential Sentence Patterns in Biomedical Literature / Expert Systems with Applications / 33(4),1036-1041

Ÿ Hao PY, Chiang JH, Tu YK / October 2007 / Hierarchically SVM Classification Based on Support Vector Clustering Method and Its Application to Document Categorization / Expert Systems with Applications / 33(3),627-635

Ÿ Hao PY, Chiang JH / March 2007 / A Fuzzy Model of Support Vector Regression Machine / International Journal of Fuzzy Systems / 9(1)45-50

Ÿ Chiang JH, Chao SY / March 2007 / Modeling Human Cancer-Related Regulatory Modules by GA-RNN Hybrid Algorithms / BMC Bioinfoamatics / 8,91

Ÿ Hao PY, Chiang JH / August 2006 / Pruning and Model-Selecting Algorithms in the RBF Frameworks Constructed by Support Vector Learning / International Journal of Neural Systems / 16(4),283-293

Ÿ Chiang JH, Shin JW, Liu HH, Chin CL / August 2006 / GeneLibrarian: An Effective Gene-Information Summarization and Visualization System / BMC Bioinformatics / 7,392

Ÿ Chiang JH, Yu HC / August 2005 / Literature Extraction of Protein Functions Using Sentence Pattern Mining / IEEE Transactions on Knowledge and Data Engineering / 17(8),1088-1098

Ÿ Chiang JH, Yue SH, Yin ZX / April 2004 / A New Fuzzy Cover Approach to Clustering / IEEE Transactions on Fuzzy Systems / 12(2),199-208

Ÿ Chiang JH, Chen YC / March 2004 / An Intelligent News Recommender Agent for Filtering and Categorizing Large Volumes of Text Corpus / International Journal of Intelligent Systems / 19(3),201-216

Ÿ Chiang JH, Hao PY / February 2004 / Support Vector Learning Mechanism for Fuzzy Rule-based Modeling: A New Approach / IEEE Transactions on Fuzzy Systems / 12(1),1-12

Ÿ Chiang JH, Yu HC, Hsu HJ / January 2004 / GIS: A Biomedical Text-mining System for Gene Information Discovery / Bioinfoamatics/ 20(1),120-121

Conference Papers

國際會議

Ÿ Yixuan Dong, Fang-Yi Su, Jung-Hsien Chiang/Mar 2026/Sgd-mix: Enhancing domain-specific image classification with label-preserving data augmentation/Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision/2026, pp. 7051-7061

Ÿ Mu-Hung Tsai, Hsi-Huei Lu, Kun-Hsing Yu, Yuan-Hua Wu, Yung-Jen Cheng, Tzu-Hui Pao, Wei-Ting Hsueh, Irene Tai-Lin Lee, Jung-Hsien Chiang/JAN 2026/Integration of Free-text Pathology Reports into Models for Automatic Contouring of Clinical Target Volume in Postoperative Head and Neck Cancer/Medical Imaging with Deep Learning/

Ÿ Ben Phan, Jung-Hsien Chiang/JUL 2025/MyMy at SemEval-2025 Task 9: A Robust Knowledge-Augmented Data Approach for Reliable Food Hazard Detection/Proceedings of the 19th International Workshop on Semantic Evaluation (SemEval-2025)/812–822 https://aclanthology.org/2025.semeval-1.112/

Ÿ Fang-Yi Su, Tzu-Hung Chang, Jung-Hsien Chiang/Feb. 2025/DiffuCE: Expert-Level CBCT Image Enhancement Using a Novel Conditional Denoising Diffusion Model with Latent Alignment/IEEE/CVF Winter Conference on Applications of Computer Vision (WACV)/2025,4635-4644,10.1109/WACV61041.2025.00455

Ÿ Pei-Chen Tsai, Tsung-Hua Lee, Kun-Chi Kuo, Fang-Yi Su, Tsung-Lu Michael Lee, Eliana Marostica, Tomotaka Ugai, Melissa Zhao, Mai Chan Lau, Juha P Väyrynen, Marios Giannakis, Yasutoshi Takashima, Seyed Mousavi Kahaki, Kana Wu, Mingyang Song, Jeffrey A Meyerhardt, Andrew T Chan, Jung-Hsien Chiang, Jonathan Nowak, Shuji Ogino, Kun-Hsing Yu/ Apr 2023 / Histopathology Images Predict Multi-Omics Aberrations and Prognoses in Colorectal Cancer Patients / Nature Communications / 14(1),2102

Ÿ Cong Phuoc Phan, Jung Hsien Chiang / December 2022 / COVID-19 Deep Clustering: An Ontology

Constructionclustering Method with Dynamic Medical Labeling / The 11th International Symposium on Information and Communication Technology / 4(10),795734

Ÿ Yu Wen Fang, Fang-Yi Su, Jung-Hsien Chiang / July 2022 / Position Classifier: Rethinking Position Encoding on Chest X-ray Diseases Identification / Medical Imaging with Deep Learning 2022 Conference Short

Ÿ Hsin-Hsiung Chang, Jung-Hsien Chiang, Cheng-Chung Chu / July 2021 / Data-Driven Generation of Medical-Research Hypotheses in Cancer Patients / 2021 IEEE 45th Annual Computers, Software, and Applications Conference(COMPSAC) / 626-631

Ÿ Chi-Shiang Wang, Hung-Chun Chne, Jung-Hsien Chiang / November 2019 / Discovering What You Cared by Intelligent Recommender System / 2019 International Conference on Technologies and Applications of Artificial Intelligence (TAAI) / 19279541

Ÿ Chi-Shiang Wang, Jung-Hsien Chiang / June 2019 / FuzzAttention on Session-Based Recommender System /2019 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE) / 2019,8858856

Ÿ Wen-Chieh Fang, Meng-Che Hsieh, Pei-Ching Yang, Wen-Gan Li, Ching-Ju Chiu, Jung-Hsien Chiang / December 2015 / iDianNao: An Orange Technology that Recommends Volunteer Opportunities to Older Adults / 2015 International Conference on Orange Technologies (ICOT) / 38-41

Ÿ Galen Chin-Lun Hung, Pei-Ching Yang, Chen-Yi Wang, Jung-Hsien Chiang / December 2015 / A Smartphone-Based Personalized Activity Recommender System for Patients with Depression / Proceedings of the 5th EAI International Conference on Wireless Mobile Communication and Healthcare / 253-257

Ÿ Yu-De Chen, Juin-Huang Ju, Ming-Yu Chien, Yu-Cheng Sheng, Tsung-Lu Lee, Jung-Hsien Chiang / September 2015 /CoTri: Extracting Chemical-Disease Relations with Co-Reference Resolution and Common Trigger Words / Proceedings of the Fifth BioCreative Challenge Evaluation Workshop / 286-291

Ÿ Wen-Chieh Fang, Pei-Ching Yang, Meng-Che Hsieh, Jung-Hsien Chiang / January 2015 / iDianNao: Recommending Volunteer Opportunities to Older Adults / International Conference on Industrial, Engineering and Other Applications of Applied Intelligent Systems / 9101,683-691

Ÿ Jiun-Huang Ju, Yu-De Chen, Jung-Hsien Chiang / April 2012 / DrTW: A Biomedical Term Weighting Method for Document Recommendation / 2012 BioCreative Workshop / 45

Ÿ Chao-Hsuan Ke, Tsung-Lu Michael Lee, Jung-Hsien Chiang/ April 2012 / C2HI: a Complete Chemical Information Decision System / 2012 BioCreative Workshop / 52

Ÿ Heng-Hui Liu, Yi-Ting Huang, Jung-Hsien Chiang / December 2010 / A study on Paragraph Ranking and Recommendation by Topic Information Retrieval from Biomedical Literature / 2010 International Computer Symposium(ICS2010) / 2010,859-864

Ÿ Wei-Ming Chen, I-Lin Wu, Jung-Hsien Chiang, Pei-Yi Hao / July 2010 / Prediction of subcelluar localization using maximal-margin spherical support vector machine / 2010 International Conference on Machine Learning and Cybernetics/ 3,1476-1481

Ÿ Shih-Yi Chao, Jung-Hsien Chiang / June 2006 / Reconstruct Feedback Control of Cell Cycle-Regulated Networks of the Yeast by Neural Network Computing / 2006 International Conference on Computing & Informatics / 10975495

Ÿ Chiang JH, Shin JW, Liu HH, Chin CL / April 2006 / Patterns Discovery on Complex Diagnosis and Biological Data Using Fuzzy Latent Variables / 2007 IEEE 23rd International Conference on Data Engineering / 576-585

Ÿ Jung-Hsien Chiang, Hsu-Chun Yu / January 2004 / Extracting Functional Annotations of Proteins Based on Hybrid Text Mining Approaches / Proc BioCreAtIvE Challenge Evaluation Workshop / 10024688058

科技部計劃

一般建教案

指導學生

博士班:

博五-潘公福

博四-蘇芳毅、陳良政

博三-周易賢、吳郁馨、蔡依良

碩士班:

碩二-黃祈緯、王宇軒、陳冠言、許圃瑄

碩一-王恩柔、楊采綾、張震奕

在職專班：

碩三-陳杰華

碩二-陳品臻

指導學生之特殊榮譽

• 2025 Ben Phan 「第十八屆台灣管理學會論文大賞」榮獲 碩士組特優論文獎
• 2024 學生林柏志、專題生黃柏育【臺大腦瘤分割挑戰賽】第四名
• 2024 碩士生劉育瑄榮獲榮獲【雲湧智生：台灣生成式AI應用黑客松競賽】創新餐飲-王品集團組-優選獎
  
• 2024 博士生蘇芳毅、蔡沛蓁榮獲【臺大腦瘤分割挑戰賽】第二名
• 2023 博士生潘公福榮獲【BioCreative VIII 國際生物資訊探勘競賽】第三名
  
• 2022 碩士生方郁文榮獲【教育部全國大專校院人工智慧競賽，農業文章文字標註及辨識競賽】第一名及創意獎
• 2021 榮獲【聯合國教科文組織(UNESCO)推舉】為全球最頂尖的十大AI團隊
• 2021 碩士生黃麗瑾榮獲【崇越論文大賞】佳作
  
• 2020 博士生王麒詳、碩士生邱煌鑌、碩士生吳昭儀榮獲【國際COVID19科技防疫黑客松】首獎
• 2019 專題生應伶軒、周郁婕、林品瑜榮獲【教育部全國大專院校 AI CUP 2019 生醫論文自動分析正式賽】第三名
• 2018 博士生楊家融榮獲【國際計算機會議】最佳論文獎
• 2015 DREAM Challenge - Prostate Cancer競賽，成果卓越獲得第二名，並受邀至美國參加RECOMB/ISCB會議發表成果
• 2015 DREAM ALS Stratification Prize4Life Challenge世界競賽，成果卓越榮獲世界冠軍，並受邀至美國參加RECOMB/ISCB會議發表成果
• 2013 BioCreative IV-Track 4- GO Task, 競賽成果卓越,受邀至美國發表成果並刊於論文集
• 2012 中華電信創新應用大賽-行動應用校園組, 急救指導, 冠軍
• 2012 華義創新軟體競賽-行動應用校園組, I-HOME, 佳作前三名
• 2011 Mobileheros通訊大賽-Android使用者介面設計競賽, 勇闖烏迪島, 企業特別獎
• 2011 中華電信創新應用大賽-行動應用校園組, Let's Point!, 第三名
• 2011 中華電信應用軟體大賽-行動應用遊戲校園組, 食材達人, 佳作
• 2011 中華電信應用軟體大賽-行動應用遊戲校園組, 享瘦大富翁, 佳作
• 2010 中華電信應用軟體大賽-行動應用組校園組, 我願意餵你, 佳作
• 2010 Mobileheros通訊大賽-Android使用者介面設計競賽, O~Sport, 校園菁英獎
• 2008 【台灣實證醫學學會會議】最佳論文獎
  
• 2003 博士生郝沛毅榮獲【龍騰論文獎】
• 2001 博士生郝沛毅榮獲【中華民國第六屆人工智慧與應用研討會(TAAI2001) 】最佳論文獎
• 2000 碩士生張恆修榮獲【龍騰論文獎】

主辦及參與國際會議

• 2023 受邀至聯合國教科文組織(UNESCO)巴黎總部發表「AI科技與SDGs環境永續」演講
  
• 2023 BioCreative VIII國際生物資訊探勘競賽
• 2023 Conference on File and Storage Technologies 第21屆國際檔案與高速儲存技術會議
• 2022 GIW2022 XXXI/ISCB-Asia V (International Conference on Genome Informatics) 國際研討會主席
• 2022 MIDL (Medical Imaging with Deep Learning) Conference Short
• 2022 Global Health and Welfare Forum in Taiwan（2022臺灣全球健康福祉論壇）Speaker 
• 2022 APEC Conference on Digital Healthcare Innovation -- COVID-19 Response by Health Information Utilization(APEC數位健康照護與創新研討會Speaker
• 2021 EuroAsia暨急重症聯合學術年會主講人
• 2018 Data Storage, Management & Analytics User Conference│Accelerate
• 2018 人工智慧 PROJECTANIME 國際研討會
• 2017 微軟世界資料中心高峰研討會
• 2017 第七屆歐盟生醫電子大會
• 2017 MathWorks亞洲研究高峰會
• 2016 Advanced Cloud Technology and Data Center Symposium
• 2012-2014 International Conference on Genome Informatics (GIW)
•          2012 為研討會主辦方
• 2014 The Design Conference for People Who Make Websites
• 2014 The IEEE World Congress on Computational Intelligence (IEEE WCCI)
• 2014 The 18th Pacific-Asia Conference on Knowledge Discovery and Data Mining(PAKDD)
• 2013 IEEE Congress on Evolutionary Computation (IEEE CEC)
• 2013 International Conference on Electrical Engineering and Computer Sciences (EECS)
• 2010 Systems Biology and Bioinformatics Symposium
• 2003 Int’l Conference on Fuzzy Systems, PC member
• 2002 The ninth Bellman Continuum International Workshop on Uncertain Systems and Soft Computing, PC member
• 1999 Int’l Conference on Fuzzy Systems (IFSA'99) Financial Co-chair
• 1998 IEEE Int’l Conference on Tools with Artificial Intelligence, PC member